Transcript: lnc-MYOC-1:2

Basic information

LNCipedia transcript ID: lnc-MYOC-1:2 
LNCipedia gene ID: lnc-MYOC-1
Ensembl Gene ID: ENSG00000225243
Ensembl Transcript ID: ENST00000445909
Location (hg19): chr1:171168386-171196864
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 442 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445909.1; RP1-127D3.4-003; OTTHUMT00000086230.1; NONHSAT007520; ENST00000445909.5
Alternative gene names: ENSG00000225243.1; RP1-127D3.4; OTTHUMG00000035507.1; ENSG00000225243.5; AL021026.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.0734 non-coding 
CPAT coding probability 4.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYOC-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYOC-1:2
4.0 lnc-MYOC-1:2
4.1 lnc-MYOC-1:2
5.0 lnc-MYOC-1:2
5.1 lnc-SH2D1B-93:2
5.2 lnc-MYOC-1:2