Transcript: lnc-NABP1-1:5

Basic information

LNCipedia transcript ID: lnc-NABP1-1:5 
LNCipedia gene ID: lnc-NABP1-1
Location (hg19): chr2:192559982-192563100
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2784 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003974; NONHSAT076132
Alternative gene names: XLOC_001788; linc-SLC39A10-10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.4294 non-coding 
CPAT coding probability 6.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NABP1-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OBFC2A-1:1
3.1 lnc-OBFC2A-1:1
4.0 lnc-OBFC2A-1:1
4.1 lnc-OBFC2A-1:1
5.0 lnc-OBFC2A-1:1
5.1 lnc-FAM171B-40:5
5.2 lnc-NABP1-1:5