Transcript: lnc-NABP1-3:3

Basic information

LNCipedia transcript ID: lnc-NABP1-3:3 
LNCipedia gene ID: lnc-NABP1-3
Ensembl Gene ID: ENSG00000225884
Ensembl Transcript ID: ENST00000413304
Location (hg19): chr2:192658151-192684976
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 543 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413304.2; AC098872.3-001; OTTHUMT00000334792.2; NONHSAT076136
Alternative gene names: ENSG00000225884.2; AC098872.3; OTTHUMG00000154310.2; AC098872.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -260.1207 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NABP1-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OBFC2A-3:3
4.0 lnc-OBFC2A-3:3
4.1 lnc-OBFC2A-3:3
5.0 lnc-OBFC2A-3:3
5.1 lnc-FAM171B-41:3
5.2 lnc-NABP1-3:3