Transcript: lnc-NADSYN1-1:2

Basic information

LNCipedia transcript ID: lnc-NADSYN1-1:2 
LNCipedia gene ID: lnc-NADSYN1-1
Ensembl Gene ID: ENSG00000254682
Ensembl Transcript ID: ENST00000529369
Location (hg19): chr11:71159720-71163203
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 680 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529369.1; RP11-660L16.2-001; OTTHUMT00000394256.1
Alternative gene names: ENSG00000254682.1; RP11-660L16.2; OTTHUMG00000167347.1; AP002387.1; AP002387.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.4036 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NADSYN1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NADSYN1-1:2
4.0 lnc-NADSYN1-1:2
4.1 lnc-NADSYN1-1:2
5.0 lnc-NADSYN1-1:2
5.1 lnc-TCIRG1-60:6
5.2 lnc-NADSYN1-1:2