Transcript: lnc-NAT10-1:3

Basic information

LNCipedia transcript ID: lnc-NAT10-1:3 
LNCipedia gene ID: lnc-NAT10-1
Location (hg19): chr11:34125502-34127710
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 830 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_460_chr11:34125501-34127710_ovary
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -198.351 non-coding 
CPAT coding probability 5.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAT10-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAPRIN1-1:1
4.0 lnc-NAT10-1:3
4.1 lnc-NAT10-1:3
5.0 lnc-NAT10-1:3
5.1 lnc-CAPRIN1-1:4
5.2 lnc-NAT10-1:3