Transcript: lnc-NAT2-1:1

Basic information

LNCipedia transcript ID: lnc-NAT2-1:1 
LNCipedia gene ID: lnc-NAT2-1
Ensembl Gene ID: ENSG00000187229
Ensembl Transcript ID: ENST00000524252
Location (hg19): chr8:18578415-18591915
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2054 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524252; ENST00000524252.1; RP11-161I2.1-001; OTTHUMT00000374886.1; NONHSAT125344
Alternative gene names: ENSG00000187229; RP11-161I2.1; ENSG00000187229.3; OTTHUMG00000163712.1; AC100800.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.7391 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAT2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NAT2-1:1
3.1 lnc-NAT2-1:1
4.0 lnc-NAT2-1:1
4.1 lnc-NAT2-1:1
5.0 lnc-NAT2-1:1
5.1 lnc-SH2D4A-13:2
5.2 lnc-NAT2-1:1