Transcript: lnc-NAV2-1:1

Basic information

LNCipedia transcript ID: lnc-NAV2-1:1 
LNCipedia gene ID: lnc-NAV2-1
Location (hg19): chr11:20145064-20151881
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 379 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019252; NONHSAT018363
Alternative gene names: XLOC_009084; linc-HTATIP2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -448.1398 non-coding 
CPAT coding probability 4.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAV2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NAV2-1:1
3.1 lnc-NAV2-1:1
4.0 lnc-NAV2-1:1
4.1 lnc-NAV2-1:1
5.0 lnc-NAV2-1:1
5.1 lnc-KCNC1-28:1
5.2 lnc-NAV2-1:1