Transcript: lnc-NAV2-2:2

Basic information

LNCipedia transcript ID: lnc-NAV2-2:2 
LNCipedia gene ID: lnc-NAV2-2
Ensembl Gene ID: ENSG00000255160
Ensembl Transcript ID: ENST00000529082
Location (hg19): chr11:19321549-19329905
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 422 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529082; ENST00000529082.1; RP11-428C19.5-002; OTTHUMT00000394487.1; NONHSAT018334
Alternative gene names: ENSG00000255160; RP11-428C19.5; ENSG00000255160.1; OTTHUMG00000166465.2; ENSG00000255160.5; AC009652.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.2343 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAV2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NAV2-2:2
3.1 lnc-NAV2-2:2
4.0 lnc-NAV2-2:2
4.1 lnc-NAV2-2:2
5.0 lnc-NAV2-2:2
5.1 lnc-KCNC1-22:2
5.2 lnc-NAV2-2:2