Transcript: lnc-NBAS-3:1

Basic information

LNCipedia transcript ID: lnc-NBAS-3:1 
LNCipedia gene ID: lnc-NBAS-3
Ensembl Gene ID: ENSG00000235127
Ensembl Transcript ID: ENST00000416173
Location (hg19): chr2:15026771-15047788
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 467 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003209; ENST00000416173; ENST00000416173.1; AC068286.1-001; OTTHUMT00000323666.1; NONHSAT069273
Alternative gene names: XLOC_001993; linc-NTSR2-1; ENSG00000235127; AC068286.1; ENSG00000235127.1; OTTHUMG00000151726.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.7774 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBAS-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NBAS-3:1
3.1 lnc-NBAS-3:1
4.0 lnc-NBAS-3:1
4.1 lnc-NBAS-3:1
5.0 lnc-NBAS-3:1
5.1 lnc-RAD51AP2-39:1
5.2 lnc-NBAS-3:1