Transcript: lnc-NBPF11-1:18

Basic information

LNCipedia transcript ID: lnc-NBPF11-1:18 
LNCipedia gene ID: lnc-NBPF11-1
RefSeq ID: NR_120331
Location (hg19): chr1:147680370-147719342
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1409 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120331; NR_120331.1
Alternative gene names: LOC101927468


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.9574 non-coding 
CPAT coding probability 2.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBPF11-1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF24-1:5
4.0 lnc-NBPF24-1:5
4.1 lnc-NBPF24-1:5
5.0 lnc-NBPF24-1:5
5.1 lnc-PPIAL4G-29:3
5.2 lnc-NBPF11-1:18