Transcript: lnc-NBPF11-1:5

Basic information

LNCipedia transcript ID: lnc-NBPF11-1:5 
LNCipedia gene ID: lnc-NBPF11-1
Location (hg19): chr1:146126404-146136197
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000482381.1; RP4-565E6.1-002; OTTHUMT00000351194.1; NONHSAT005976
Alternative gene names: ENSG00000227733.2; RP4-565E6.1; OTTHUMG00000013881.2; ENSG00000227733.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.2336 non-coding 
CPAT coding probability 2.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBPF11-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF11-1:5
4.0 lnc-NBPF11-1:5
4.1 lnc-NBPF11-1:5
5.0 lnc-NBPF11-1:5
5.1 lnc-PPIAL4G-29:34
5.2 lnc-NBPF11-1:5