Transcript: lnc-NBPF11-2:2

Basic information

LNCipedia transcript ID: lnc-NBPF11-2:2 
LNCipedia gene ID: lnc-NBPF11-2
Location (hg19): chr1:147466094-147484331
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3498 bp
Exons: 9
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000401008.2; RP6-74O6.2-001; OTTHUMT00000039109.1; NR_003377; ENST00000401008.6
Alternative gene names: ENSG00000215859.4; RP6-74O6.2; OTTHUMG00000013940.1; ENSG00000215859.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 856.7612 coding 
CPAT coding probability 99.82% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NBPF11-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF24-2:1
4.0 lnc-NBPF24-2:1
4.1 lnc-NBPF24-2:1
5.0 lnc-NBPF24-2:1
5.1 lnc-PPIAL4G-38:2
5.2 lnc-NBPF11-2:2