Transcript: lnc-NBPF12-47:2

Basic information

LNCipedia transcript ID: lnc-NBPF12-47:2 
LNCipedia gene ID: lnc-NBPF12-47
Ensembl Gene ID: ENSG00000277420
Ensembl Transcript ID: ENST00000621489
Location (hg19): :-
Strand:
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2538 bp
Exons: 0
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621489.1
Alternative gene names: ENSG00000277420.1; CH17-408M7.1; AC245407.1; AC245407.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -8.5949 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBPF12-47:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-FCGR1A-47:2
5.1 lnc-FCGR1A-47:2
5.2 lnc-NBPF12-47:2