Transcript: lnc-NBPF6-8:3

Basic information

LNCipedia transcript ID: lnc-NBPF6-8:3 
LNCipedia gene ID: lnc-NBPF6-8
Location (hg19): chr1:108876283-108918572
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 393 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000450435.1; RP11-483I13.4-002; OTTHUMT00000331134.1; NONHSAT004983
Alternative gene names: ENSG00000188740.6; RP11-483I13.4; OTTHUMG00000011321.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.3406 non-coding 
CPAT coding probability 39.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NBPF6-8:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF6-1:2
4.0 lnc-NBPF6-1:2
4.1 lnc-NBPF6-1:2
5.0 lnc-NBPF6-1:2
5.1 lnc-GSTM5-35:3
5.2 lnc-NBPF6-8:3