Transcript: lnc-NBPF6-8:5

Basic information

LNCipedia transcript ID: lnc-NBPF6-8:5 
LNCipedia gene ID: lnc-NBPF6-8
Location (hg19): chr1:108918460-108953429
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1238 bp
Exons: 9
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000545941.1; NBPF5-201
Alternative gene names: ENSG00000243967.3; NBPF5; OTTHUMG00000011317.6; NBPF5P


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.7958 non-coding 
CPAT coding probability 68.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NBPF6-8:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF6-1:4
4.0 lnc-NBPF6-1:4
4.1 lnc-NBPF6-1:4
5.0 lnc-NBPF6-1:4
5.1 lnc-GSTM5-35:5
5.2 lnc-NBPF6-8:5