Transcript: lnc-NBPF9-6:2

Basic information

LNCipedia transcript ID: lnc-NBPF9-6:2 
LNCipedia gene ID: lnc-NBPF9-6
Location (hg19): chr1:144858211-144865740
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 573 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000524505.1; RP4-791M13.4-002; OTTHUMT00000385428.1; NONHSAT005856
Alternative gene names: ENSG00000255148.1; RP4-791M13.4; OTTHUMG00000165625.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.003 non-coding 
CPAT coding probability 19.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBPF9-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF9-1:2
4.0 lnc-NBPF9-6:2
4.1 lnc-NBPF9-6:2
5.0 lnc-NBPF9-6:2
5.1 lnc-PPIAL4G-40:2
5.2 lnc-NBPF9-6:2