Transcript: lnc-NCBP2-AS2-1:4

Basic information

LNCipedia transcript ID: lnc-NCBP2-AS2-1:4 
LNCipedia gene ID: lnc-NCBP2-AS2-1
Location (hg19): chr3:196640757-196641313
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 557 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000432047.1; AC127904.2-001; OTTHUMT00000340531.1
Alternative gene names: ENSG00000230732.1; AC127904.2; OTTHUMG00000155528.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.7892 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCBP2-AS2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAK2-1:1
4.0 lnc-PAK2-1:1
4.1 lnc-PAK2-1:1
5.0 lnc-PAK2-1:1
5.1 lnc-NCBP2-AS2-2:4
5.2 lnc-NCBP2-AS2-1:4