Transcript: lnc-NCKAP1-1:2

Basic information

LNCipedia transcript ID: lnc-NCKAP1-1:2 
LNCipedia gene ID: lnc-NCKAP1-1
Ensembl Gene ID: ENSG00000224643
Ensembl Transcript ID: ENST00000413954
Location (hg19): chr2:183960151-183972431
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 382 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413954.1; AC064871.3-002; OTTHUMT00000334525.1; NONHSAT075935
Alternative gene names: ENSG00000224643.1; AC064871.3; OTTHUMG00000154238.1; ENSG00000224643.5; AC064871.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 57.6059 non-coding 
CPAT coding probability 6.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NCKAP1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NCKAP1-1:2
4.0 lnc-NCKAP1-1:2
4.1 lnc-NCKAP1-1:2
5.0 lnc-NCKAP1-1:2
5.1 lnc-SESTD1-43:2
5.2 lnc-NCKAP1-1:2