Transcript: lnc-NCOA3-10:5

Basic information

LNCipedia transcript ID: lnc-NCOA3-10:5 
LNCipedia gene ID: lnc-NCOA3-10
Location (hg19): chr20:46750577-46755530
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2244 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028198; NONHSAT080129
Alternative gene names: XLOC_013549; linc-ARFGEF2-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.0515 non-coding 
CPAT coding probability 8.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOA3-10:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOA3-10:1
3.1 lnc-NCOA3-11:1
4.0 lnc-NCOA3-10:5
4.1 lnc-NCOA3-10:5
5.0 lnc-NCOA3-10:5
5.1 lnc-SNAI1-50:10
5.2 lnc-NCOA3-10:5