Transcript: lnc-NCOA3-10:7

Basic information

LNCipedia transcript ID: lnc-NCOA3-10:7 
LNCipedia gene ID: lnc-NCOA3-10
Location (hg19): chr20:46749019-46755530
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4995 bp
Exons: 7
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000053443.1|HBMT00000890977.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 36.2258 non-coding 
CPAT coding probability 3.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOA3-10:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NCOA3-10:7
5.0 lnc-NCOA3-10:7
5.1 lnc-SNAI1-50:5
5.2 lnc-NCOA3-10:7