Transcript: lnc-NCOR2-1:1

Basic information

LNCipedia transcript ID: lnc-NCOR2-1:1 
LNCipedia gene ID: lnc-NCOR2-1
Location (hg19): chr12:124742379-124750677
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 302 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020965; NONHSAT031656
Alternative gene names: XLOC_010235; linc-CCDC92-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.6095 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOR2-1:1 no no no no

Available literature

  1. Song (2016), Identification of differentially expressed signatures of long non-coding RNAs associated with different metastatic potentials in gastric cancer., J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOR2-1:1
3.1 lnc-NCOR2-1:1
4.0 lnc-NCOR2-1:1
4.1 lnc-NCOR2-1:1
5.0 lnc-NCOR2-1:1
5.1 lnc-NCOR2-1:1
5.2 lnc-NCOR2-1:1