Transcript: lnc-NDFIP2-11:1

Basic information

LNCipedia transcript ID: lnc-NDFIP2-11:1 
LNCipedia gene ID: lnc-NDFIP2-11
Location (hg19): chr13:81853964-81876842
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 252 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021862; NONHSAT034529
Alternative gene names: XLOC_010456; linc-SLITRK5-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.2492 non-coding 
CPAT coding probability 4.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDFIP2-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDFIP2-11:1
3.1 lnc-NDFIP2-11:1
4.0 lnc-NDFIP2-11:1
4.1 lnc-NDFIP2-11:1
5.0 lnc-NDFIP2-11:1
5.1 lnc-COL4A2-193:2
5.2 lnc-NDFIP2-11:1