Transcript: lnc-NDFIP2-7:6

Basic information

LNCipedia transcript ID: lnc-NDFIP2-7:6 
LNCipedia gene ID: lnc-NDFIP2-7
RefSeq ID: NR_120413
Location (hg19): chr13:80446721-80492171
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 982 bp
Exons: 6
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120413; NR_120413.1
Alternative gene names: LINC00382


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -146.5371 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDFIP2-7:6 no no no no

Available literature

  1. Luo (2015), Lack of association of a genetic variant in the long intergenic noncoding RNA (linc01080) with Alzheimer's disease and amnestic mild cognitive impairment in Han Chinese., Int. J. Neurosci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NDFIP2-7:6
4.0 lnc-NDFIP2-7:6
4.1 lnc-NDFIP2-7:6
5.0 lnc-NDFIP2-7:6
5.1 lnc-COL4A2-200:5
5.2 lnc-NDFIP2-7:6