Transcript: lnc-NDST1-1:2

Basic information

LNCipedia transcript ID: lnc-NDST1-1:2 
LNCipedia gene ID: lnc-NDST1-1
Location (hg19): chr5:149829002-149829258
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 257 bp
Exons: 1
Sources: long non-coding rna db - lncrnadb.com
Alternative transcript names: Alpha-250
Alternative gene names: Alpha-250/Alpha-280


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDST1-1:2 yes no no no

Available literature

  1. Tasheva (1995), Regulation of human RPS14 transcription by intronic antisense RNAs and ribosomal protein S14., Genes Dev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDST1-1:2
3.1 lnc-NDST1-1:2
4.0 lnc-NDST1-1:2
4.1 lnc-NDST1-1:2
5.0 lnc-NDST1-1:2
5.1 lnc-HMGXB3-6:4
5.2 lnc-NDST1-1:2