Transcript: lnc-NDUFA10-2:1

Basic information

LNCipedia transcript ID: lnc-NDUFA10-2:1 
LNCipedia gene ID: lnc-NDUFA10-2
RefSeq ID: NR_026664
Location (hg19): chr2:240115027-240117153
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2127 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT077791; NR_026664; NR_026664.1
Alternative gene names: MGC16025


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.5271 non-coding 
CPAT coding probability 4.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDUFA10-2:1 yes no no no

Available literature

  1. Charpentier (2016), IRES-dependent translation of the long non coding RNA meloe in melanoma cells produces the most immunogenic MELOE antigens., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC017028.1-1:1
4.0 lnc-AC017028.1-1:1
4.1 lnc-AC017028.1-1:1
5.0 lnc-AC017028.1-1:1
5.1 lnc-STK25-45:1
5.2 lnc-NDUFA10-2:1