Transcript: lnc-NDUFAF2-2:17

Basic information

LNCipedia transcript ID: lnc-NDUFAF2-2:17 
LNCipedia gene ID: lnc-NDUFAF2-2
Ensembl Gene ID: ENSG00000248935
Ensembl Transcript ID: ENST00000502993
Location (hg19): chr5:59317076-59326799
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 465 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502993.1; CTD-2254N19.1-001; OTTHUMT00000367929.1; NONHSAT101633
Alternative gene names: ENSG00000248935.1; CTD-2254N19.1; OTTHUMG00000162214.1; AC034234.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.0254 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDUFAF2-2:17 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC109486.1-2:1
4.0 lnc-AC109486.1-2:1
4.1 lnc-AC109486.1-2:1
5.0 lnc-AC109486.1-2:1
5.1 lnc-GAPT-20:1
5.2 lnc-NDUFAF2-2:17