Transcript: lnc-NDUFS6-4:1

Basic information

LNCipedia transcript ID: lnc-NDUFS6-4:1 
LNCipedia gene ID: lnc-NDUFS6-4
Ensembl Gene ID: ENSG00000249326
Ensembl Transcript ID: ENST00000514569
Location (hg19): chr5:1887446-1900607
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1635 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009325; ENST00000514569; ENST00000514569.1; CTD-2194D22.4-001; OTTHUMT00000365497.1; NONHSAT100077
Alternative gene names: XLOC_004249; linc-C5orf38-7; ENSG00000249326; CTD-2194D22.4; ENSG00000249326.1; OTTHUMG00000161605.1; AC025183.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.0919 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDUFS6-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDUFS6-2:1
3.1 lnc-NDUFS6-4:1
4.0 lnc-NDUFS6-4:1
4.1 lnc-NDUFS6-4:1
5.0 lnc-NDUFS6-4:1
5.1 lnc-CARD6-362:3
5.2 lnc-NDUFS6-4:1