Transcript: lnc-NECAP2-4:1

Basic information

LNCipedia transcript ID: lnc-NECAP2-4:1 
LNCipedia gene ID: lnc-NECAP2-4
Location (hg19): chr1:16825882-16830483
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3135 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000030568.1|MICT00000004058.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -5.1588 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NECAP2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AL355149.1-4:2
5.0 lnc-AL355149.1-4:2
5.1 lnc-SZRD1-6:1
5.2 lnc-NECAP2-4:1