Transcript: lnc-NECTIN1-3:1

Basic information

LNCipedia transcript ID: lnc-NECTIN1-3:1 
LNCipedia gene ID: lnc-NECTIN1-3
Location (hg19): chr11:119625678-119641851
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2128 bp
Exons: 8
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc001pxd_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.0641 non-coding 
CPAT coding probability 8.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NECTIN1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PVRL1-3:1
4.0 lnc-PVRL1-3:1
4.1 lnc-PVRL1-3:1
5.0 lnc-PVRL1-3:1
5.1 lnc-SLC37A4-36:1
5.2 lnc-NECTIN1-3:1