Transcript: lnc-NID2-2:1

Basic information

LNCipedia transcript ID: lnc-NID2-2:1 
LNCipedia gene ID: lnc-NID2-2
Ensembl Gene ID: ENSG00000259007
Ensembl Transcript ID: ENST00000553603
Location (hg19): chr14:52433721-52436518
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 479 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553603.1; RP11-463J10.3-001; OTTHUMT00000411596.1; NONHSAT036873
Alternative gene names: ENSG00000259007.1; RP11-463J10.3; OTTHUMG00000171085.1; AL358333.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.9048 non-coding 
CPAT coding probability 2.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NID2-2:1 no no no no

Available literature

  1. Yu (2015), Glucocorticoids Significantly Influence the Transcriptome of Bone Microvascular Endothelial Cells of Human Femoral Head., Chin. Med. J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NID2-2:1
4.0 lnc-NID2-2:1
4.1 lnc-NID2-2:1
5.0 lnc-NID2-2:1
5.1 lnc-RTN1-93:1
5.2 lnc-NID2-2:1