Transcript: lnc-NIF3L1-5:2

Basic information

LNCipedia transcript ID: lnc-NIF3L1-5:2 
LNCipedia gene ID: lnc-NIF3L1-5
Ensembl Gene ID: ENSG00000183308
Ensembl Transcript ID: ENST00000332935
Location (hg19): chr2:201828022-201843705
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 820 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000332935.6; AC005037.3-002; OTTHUMT00000336587.1; NONHSAT076353
Alternative gene names: ENSG00000183308.6; AC005037.3; OTTHUMG00000154691.1; AC005037.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.14 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NIF3L1-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NIF3L1-1:2
4.0 lnc-NDUFB3-3:3
4.1 lnc-NDUFB3-3:3
5.0 lnc-NDUFB3-3:3
5.1 lnc-NDUFB3-4:7
5.2 lnc-NIF3L1-5:2