Transcript: lnc-NIN-1:1

Basic information

LNCipedia transcript ID: lnc-NIN-1:1 
LNCipedia gene ID: lnc-NIN-1
Location (hg19): chr14:51350294-51353947
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1893 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000554141.1; RP11-218E20.6-001; OTTHUMT00000411970.1; NONHSAT036819
Alternative gene names: ENSG00000258398.1; RP11-218E20.6; OTTHUMG00000171157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.4249 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NIN-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NIN-1:1
4.0 lnc-NIN-1:1
4.1 lnc-NIN-1:1
5.0 lnc-NIN-1:1
5.1 lnc-RTN1-104:1
5.2 lnc-NIN-1:1