Transcript: lnc-NIN-4:1

Basic information

LNCipedia transcript ID: lnc-NIN-4:1 
LNCipedia gene ID: lnc-NIN-4
Ensembl Gene ID: ENSG00000269906
Ensembl Transcript ID: ENST00000602954
Location (hg19): chr14:51129229-51129896
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 668 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT036811; ENST00000602954.1
Alternative gene names: ENSG00000269906.1; RP11-248J18.2; AL606834.2; AL606834.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.87 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NIN-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NIN-4:1
4.0 lnc-NIN-4:1
4.1 lnc-NIN-4:1
5.0 lnc-NIN-4:1
5.1 lnc-RTN1-109:1
5.2 lnc-NIN-4:1