Transcript: lnc-NIPA1-2:11

Basic information

LNCipedia transcript ID: lnc-NIPA1-2:11 
LNCipedia gene ID: lnc-NIPA1-2
RefSeq ID: NR_040057
Location (hg19): chr15:23094331-23115254
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1445 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT040781; NR_040057; NR_040057.1
Alternative gene names: LOC283683


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 40.9072 non-coding 
CPAT coding probability 15.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NIPA1-2:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NIPA1-2:11
4.0 lnc-NIPA1-2:11
4.1 lnc-NIPA1-2:11
5.0 lnc-NIPA1-2:11
5.1 lnc-SNRPN-43:3
5.2 lnc-NIPA1-2:11