Transcript: lnc-NKAIN3-14:20

Basic information

LNCipedia transcript ID: lnc-NKAIN3-14:20 
LNCipedia gene ID: lnc-NKAIN3-14
Ensembl Gene ID: ENSG00000254119
Ensembl Transcript ID: ENST00000523042
Location (hg19): chr8:62737887-62765264
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 535 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523042; ENST00000523042.1; RP11-705O24.1-010; OTTHUMT00000378336.1; NONHSAT126891; ENST00000523042.5
Alternative gene names: ENSG00000254119; RP11-705O24.1; ENSG00000254119.1; OTTHUMG00000164339.2; ENSG00000254119.5; AC025524.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.4303 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKAIN3-14:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLVS1-3:5
3.1 lnc-CLVS1-3:5
4.0 lnc-CLVS1-3:5
4.1 lnc-NKAIN3-14:20
5.0 lnc-NKAIN3-14:20
5.1 lnc-SDCBP-62:20
5.2 lnc-NKAIN3-14:20