Transcript: lnc-NKAIN3-1:2

Basic information

LNCipedia transcript ID: lnc-NKAIN3-1:2 
LNCipedia gene ID: lnc-NKAIN3-1
Ensembl Gene ID: ENSG00000240915
Ensembl Transcript ID: ENST00000524309
Location (hg19): chr8:63925627-63927240
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 550 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524309.1; RP11-659E9.2-001; OTTHUMT00000378451.1; NONHSAT126912
Alternative gene names: ENSG00000240915.2; RP11-659E9.2; OTTHUMG00000164364.1; AC120042.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.9212 non-coding 
CPAT coding probability 2.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKAIN3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKAIN3-1:2
4.0 lnc-NKAIN3-1:2
4.1 lnc-NKAIN3-1:2
5.0 lnc-NKAIN3-1:2
5.1 lnc-SGK3-40:2
5.2 lnc-NKAIN3-1:2