Transcript: lnc-NKD2-2:1

Basic information

LNCipedia transcript ID: lnc-NKD2-2:1 
LNCipedia gene ID: lnc-NKD2-2
Location (hg19): chr5:1004860-1006734
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1699 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000502737; NONHSAT099952
Alternative gene names: ENSG00000249622; AC116351.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.729 non-coding 
CPAT coding probability 43.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NKD2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKD2-2:1
3.1 lnc-NKD2-2:1
4.0 lnc-NKD2-2:1
4.1 lnc-NKD2-2:1
5.0 lnc-NKD2-2:1
5.1 lnc-CARD6-383:1
5.2 lnc-NKD2-2:1