Transcript: lnc-NKD2-3:5

Basic information

LNCipedia transcript ID: lnc-NKD2-3:5 
LNCipedia gene ID: lnc-NKD2-3
Location (hg19): chr5:1044294-1046088
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009830; NONHSAT099972
Alternative gene names: XLOC_004244; linc-SLC6A19-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.4686 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKD2-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKD2-3:5
3.1 lnc-NKD2-3:5
4.0 lnc-NKD2-3:5
4.1 lnc-NKD2-3:5
5.0 lnc-NKD2-3:5
5.1 lnc-CARD6-380:6
5.2 lnc-NKD2-3:5