Transcript: lnc-NKX2-4-6:2

Basic information

LNCipedia transcript ID: lnc-NKX2-4-6:2 
LNCipedia gene ID: lnc-NKX2-4-6
Location (hg19): chr20:21282968-21284349
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 925 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000054434.1|MICT00000214862.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.8084 non-coding 
CPAT coding probability 9.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX2-4-6:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NKX2-4-6:2
5.0 lnc-NKX2-4-6:2
5.1 lnc-CST4-69:1
5.2 lnc-NKX2-4-6:2