Transcript: lnc-NKX6-1-9:1

Basic information

LNCipedia transcript ID: lnc-NKX6-1-9:1 
LNCipedia gene ID: lnc-NKX6-1-9
Location (hg19): chr4:85722943-85725327
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 545 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT097245
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -245.3127 non-coding 
CPAT coding probability 30.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX6-1-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKX6-1-9:1
4.0 lnc-NKX6-1-9:1
4.1 lnc-NKX6-1-9:1
5.0 lnc-NKX6-1-9:1
5.1 lnc-LIN54-25:1
5.2 lnc-NKX6-1-9:1