Transcript: lnc-NKX6-3-4:2

Basic information

LNCipedia transcript ID: lnc-NKX6-3-4:2 
LNCipedia gene ID: lnc-NKX6-3-4
Location (hg19): chr8:41391674-41435940
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 612 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000253133.1|ENST00000523081.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -27.8042 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX6-3-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-360L9.4.1-1:4
5.0 lnc-RP11-360L9.4.1-1:4
5.1 lnc-SFRP1-6:2
5.2 lnc-NKX6-3-4:2