Transcript: lnc-NLGN4X-1:2

Basic information

LNCipedia transcript ID: lnc-NLGN4X-1:2 
LNCipedia gene ID: lnc-NLGN4X-1
Location (hg19): chrX:5571464-5644121
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000456559; ENST00000456559.1; RP11-733O18.1-003; OTTHUMT00000055669.1; NONHSAT136157
Alternative gene names: ENSG00000236120; RP11-733O18.1; ENSG00000236120.1; OTTHUMG00000021092.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.2509 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NLGN4X-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NLGN4X-1:2
3.1 lnc-NLGN4X-1:2
4.0 lnc-NLGN4X-1:2
4.1 lnc-NLGN4X-1:2
5.0 lnc-NLGN4X-1:2
5.1 lnc-PCSK1N-243:6
5.2 lnc-NLGN4X-1:2