Transcript: lnc-NME4-1:5

Basic information

LNCipedia transcript ID: lnc-NME4-1:5 
LNCipedia gene ID: lnc-NME4-1
Location (hg19): chr16:436663-437323
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 661 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000544386.1; Z97634.5-201; NONHSAT051766
Alternative gene names: ENSG00000236829.4; Z97634.5; OTTHUMG00000064974.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 231.3443 coding 
CPAT coding probability 98.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NME4-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NME4-1:5
4.0 lnc-NME4-1:5
4.1 lnc-NME4-1:5
5.0 lnc-NME4-1:5
5.1 lnc-DNASE1L2-113:7
5.2 lnc-NME4-1:5