Transcript: lnc-NMNAT3-3:3

Basic information

LNCipedia transcript ID: lnc-NMNAT3-3:3 
LNCipedia gene ID: lnc-NMNAT3-3
Ensembl Gene ID: ENSG00000249290
Ensembl Transcript ID: ENST00000502712
Location (hg19): chr3:140168277-140173573
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 794 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502712.1; RP11-68L1.2-003; OTTHUMT00000359450.1; NONHSAT092396; ENST00000502712.5
Alternative gene names: ENSG00000249290.1; RP11-68L1.2; OTTHUMG00000160163.1; ENSG00000249290.5; AC010181.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.7431 non-coding 
CPAT coding probability 5.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NMNAT3-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NMNAT3-3:3
4.0 lnc-NMNAT3-3:3
4.1 lnc-NMNAT3-3:3
5.0 lnc-NMNAT3-3:3
5.1 lnc-NMNAT3-3:3
5.2 lnc-NMNAT3-3:3