Transcript: lnc-NOCT-5:5

Basic information

LNCipedia transcript ID: lnc-NOCT-5:5 
LNCipedia gene ID: lnc-NOCT-5
Location (hg19): chr4:138871619-138874368
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 929 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008264; NONHSAT098410
Alternative gene names: XLOC_003706; linc-CCRN4L-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.521 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NOCT-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCRN4L-4:3
3.1 lnc-CCRN4L-5:3
4.0 lnc-CCRN4L-5:3
4.1 lnc-CCRN4L-5:3
5.0 lnc-CCRN4L-5:3
5.1 lnc-NOCT-4:4
5.2 lnc-NOCT-5:5