Transcript: lnc-NOS2-2:1

Basic information

LNCipedia transcript ID: lnc-NOS2-2:1 
LNCipedia gene ID: lnc-NOS2-2
Ensembl Gene ID: ENSG00000266872
Ensembl Transcript ID: ENST00000577746
Location (hg19): chr17:25952510-25953464
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 656 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577746.1; RP11-19P22.8-001; OTTHUMT00000445491.1; NONHSAT052330
Alternative gene names: ENSG00000266872.1; RP11-19P22.8; OTTHUMG00000179258.1; AC015688.8; AC015688.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.4773 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NOS2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NOS2-2:1
4.0 lnc-NOS2-2:1
4.1 lnc-NOS2-2:1
5.0 lnc-NOS2-2:1
5.1 lnc-SLC6A4-126:1
5.2 lnc-NOS2-2:1