Transcript: lnc-NPAP1-8:2

Basic information

LNCipedia transcript ID: lnc-NPAP1-8:2 
LNCipedia gene ID: lnc-NPAP1-8
Ensembl Gene ID: ENSG00000261598
Ensembl Transcript ID: ENST00000570105
Location (hg19): chr15:24544896-24545785
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 415 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000570105.1; RP11-107D24.2-001; OTTHUMT00000431877.1; NONHSAT040892
Alternative gene names: ENSG00000261598.1; RP11-107D24.2; OTTHUMG00000176386.1; AC087463.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.424 non-coding 
CPAT coding probability 1.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPAP1-8:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C15orf2-8:2
4.0 lnc-C15orf2-8:2
4.1 lnc-C15orf2-8:2
5.0 lnc-C15orf2-8:2
5.1 lnc-SNRPN-15:2
5.2 lnc-NPAP1-8:2