Transcript: lnc-NPBWR1-2:1

Basic information

LNCipedia transcript ID: lnc-NPBWR1-2:1 
LNCipedia gene ID: lnc-NPBWR1-2
Ensembl Gene ID: ENSG00000271555
Ensembl Transcript ID: ENST00000605049
Location (hg19): chr8:53635463-53635701
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 239 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT126572; ENST00000605049.1
Alternative gene names: ENSG00000271555.1; CTD-3214K23.1; AC113139.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.3007 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPBWR1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPBWR1-2:1
4.0 lnc-NPBWR1-2:1
4.1 lnc-NPBWR1-2:1
5.0 lnc-NPBWR1-2:1
5.1 lnc-SDCBP-83:10
5.2 lnc-NPBWR1-2:1