Transcript: lnc-NPBWR1-8:1

Basic information

LNCipedia transcript ID: lnc-NPBWR1-8:1 
LNCipedia gene ID: lnc-NPBWR1-8
Ensembl Gene ID: ENSG00000253924
Ensembl Transcript ID: ENST00000522228
Location (hg19): chr8:53207015-53214502
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 422 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000522228; ENST00000522228.1; RP11-1023P17.2-001; OTTHUMT00000377943.1; NONHSAT126561
Alternative gene names: ENSG00000253924; RP11-1023P17.2; ENSG00000253924.1; OTTHUMG00000164252.1; AC103831.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.2895 non-coding 
CPAT coding probability 2.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPBWR1-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC090186.1-2:1
3.1 lnc-AC090186.1-5:1
4.0 lnc-AC090186.1-5:1
4.1 lnc-AC090186.1-5:1
5.0 lnc-AC090186.1-5:1
5.1 lnc-SDCBP-86:1
5.2 lnc-NPBWR1-8:1