Transcript: lnc-NPDC1-1:1

Basic information

LNCipedia transcript ID: lnc-NPDC1-1:1 
LNCipedia gene ID: lnc-NPDC1-1
Location (hg19): chr9:139932430-139933342
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 329 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000434532.1; RP11-229P13.21-001; OTTHUMT00000055263.1; NONHSAT135655
Alternative gene names: ENSG00000228866.1; RP11-229P13.21; OTTHUMG00000020973.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.9208 non-coding 
CPAT coding probability 7.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPDC1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPDC1-1:1
4.0 lnc-NPDC1-1:1
4.1 lnc-NPDC1-1:1
5.0 lnc-NPDC1-1:1
5.1 lnc-RNF208-16:1
5.2 lnc-NPDC1-1:1